JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUDT10_chrX_51327822_51342525	0/0	c0044	3272	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0045	3271	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0046	3272	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0047	3271	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0048	3275	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0049	3274	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0050	3272	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0051	3272	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0052	3271	1	0	0	0	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0053	3273	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0054	3270	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0055	3268	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT11_chrX_51485011_51501592	0/1	c0001	494	264	72	46	102	11	32	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	c0002	494	3	3	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	c0003	495	2	0	0	2	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	1/0	c0004	495	1	0	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	c0005	494	1	0	0	1	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	c0006	494	1	1	0	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	c0007	494	1	0	1	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT11_chrX_51485011_51501592	0/0	c0008	494	1	0	1	0	0	0	copy fasta	NUDT11	chrX	51485011	51501592
NUDT12_chr5_103543855_103567789	0/0	c0001	1389	196	32	31	96	8	29	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	1/0	c0002	1389	184	33	28	106	4	12	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	c0003	1389	36	16	9	3	4	4	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/1	c0004	1389	16	8	7	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	c0005	1389	3	2	1	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	c0006	1389	1	0	0	0	0	1	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	c0007	1389	1	1	0	0	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT12_chr5_103543855_103567789	0/0	c0008	1389	1	0	0	1	0	0	copy fasta	NUDT12	chr5	103543855	103567789
NUDT13_chr10_73105455_73136823	1/1	c0001	1059	296	65	40	149	4	36	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0002	1060	17	15	2	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0003	1059	2	1	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0004	1059	2	1	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0005	1059	1	0	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0006	1059	1	0	1	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0007	1060	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0008	1059	1	0	0	1	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0010	1059	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT13_chr10_73105455_73136823	0/0	c0011	1059	1	1	0	0	0	0	copy fasta	NUDT13	chr10	73105455	73136823
NUDT14_chr14_105167939_105186312	1/1	c0001	669	396	94	73	170	10	47	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	c0002	669	1	0	0	0	0	1	copy fasta	NUDT14	chr14	105167939	105186312
NUDT14_chr14_105167939_105186312	0/0	c0003	669	1	0	1	0	0	0	copy fasta	NUDT14	chr14	105167939	105186312
NUDT15_chr13_48032726_48052221	1/1	c0001	495	400	96	70	166	18	48	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	c0002	501	11	0	3	8	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	c0003	495	10	0	0	10	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	c0004	495	2	0	0	2	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT15_chr13_48032726_48052221	0/0	c0005	495	1	0	1	0	0	0	copy fasta	NUDT15	chr13	48032726	48052221
NUDT16L1_chr16_4688562_4700844	1/1	c0001	636	425	89	79	192	17	46	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	c0002	636	9	8	1	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	c0003	636	3	0	0	3	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844