JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUDT16L1_chr16_4688562_4700844	0/0	c0004	636	1	0	0	0	1	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	c0005	636	1	1	0	0	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16L1_chr16_4688562_4700844	0/0	c0006	636	1	0	0	1	0	0	copy fasta	NUDT16L1	chr16	4688562	4700844
NUDT16_chr3_131376774_131393830	1/1	c0001	588	340	48	58	173	16	43	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	c0002	588	37	2	5	30	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	c0003	588	34	26	8	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	c0004	588	4	3	1	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	c0005	588	3	3	0	0	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	c0006	588	1	0	0	0	0	1	copy fasta	NUDT16	chr3	131376774	131393830
NUDT16_chr3_131376774_131393830	0/0	c0007	588	1	0	0	1	0	0	copy fasta	NUDT16	chr3	131376774	131393830
NUDT17_chr1_145840630_145853954	1/1	c0001	987	379	84	70	164	17	42	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	c0002	987	14	0	0	14	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	c0003	987	6	6	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	c0004	987	5	5	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	c0005	987	1	1	0	0	0	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT17_chr1_145840630_145853954	0/0	c0006	987	1	0	0	0	1	0	copy fasta	NUDT17	chr1	145840630	145853954
NUDT18_chr8_22101878_22114419	0/0	c0001	972	210	43	45	92	6	24	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	1/1	c0002	972	176	50	28	69	12	15	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0003	972	5	1	0	4	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0004	972	2	0	2	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0005	972	1	0	1	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0006	972	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0007	972	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0008	972	1	0	0	0	0	1	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0009	972	1	1	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0010	972	1	1	0	0	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT18_chr8_22101878_22114419	0/0	c0011	972	1	0	0	1	0	0	copy fasta	NUDT18	chr8	22101878	22114419
NUDT19_chr19_32686821_32718792	1/1	c0001	1128	183	46	32	72	9	22	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0002	1128	95	14	16	52	2	11	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0003	1128	81	17	8	46	3	7	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0004	1128	13	0	0	12	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0005	1128	8	7	1	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0006	1128	7	0	0	7	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0007	1128	6	0	0	6	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0008	1128	3	3	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0009	1128	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0010	1128	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0012	1128	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0013	1128	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0014	1128	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0015	1128	1	0	0	1	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0016	1128	1	0	0	0	0	1	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0017	1128	1	0	1	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT19_chr19_32686821_32718792	0/0	c0018	1128	1	1	0	0	0	0	copy fasta	NUDT19	chr19	32686821	32718792
NUDT1_chr7_2237226_2256145	1/0	c0001	471	335	82	56	154	14	28	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/1	c0002	471	50	7	21	8	2	11	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	c0003	471	18	0	1	15	0	2	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	c0004	471	8	5	0	0	0	3	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	c0005	471	1	0	0	1	0	0	copy fasta	NUDT1	chr7	2237226	2256145