JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUDT1_chr7_2237226_2256145	0/0	c0006	471	1	1	0	0	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT1_chr7_2237226_2256145	0/0	c0007	471	1	1	0	0	0	0	copy fasta	NUDT1	chr7	2237226	2256145
NUDT21_chr16_56424133_56456332	1/1	c0001	684	409	90	69	192	12	44	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	c0002	684	2	2	0	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	c0003	684	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	c0004	684	1	0	0	1	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT21_chr16_56424133_56456332	0/0	c0005	684	1	0	1	0	0	0	copy fasta	NUDT21	chr16	56424133	56456332
NUDT22_chr11_64221274_64235016	0/1	c0001	912	272	37	73	122	5	34	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0002	912	48	26	2	14	0	6	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	1/0	c0003	912	21	19	1	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0004	912	7	0	0	7	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0005	912	6	1	0	5	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0006	912	6	0	0	6	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0007	912	2	2	0	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0008	912	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0009	912	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0010	912	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0011	912	1	0	0	1	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0012	912	1	0	0	0	1	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0013	912	1	1	0	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0014	912	1	1	0	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT22_chr11_64221274_64235016	0/0	c0015	912	1	1	0	0	0	0	copy fasta	NUDT22	chr11	64221274	64235016
NUDT2_chr9_34324569_34348699	1/1	c0001	444	435	90	86	190	17	50	copy fasta	NUDT2	chr9	34324569	34348699
NUDT2_chr9_34324569_34348699	0/0	c0002	444	1	0	0	0	1	0	copy fasta	NUDT2	chr9	34324569	34348699
NUDT3_chr6_34274679_34397669	1/1	c0001	519	269	75	50	114	4	24	copy fasta	NUDT3	chr6	34274679	34397669
NUDT3_chr6_34274679_34397669	0/0	c0002	519	1	1	0	0	0	0	copy fasta	NUDT3	chr6	34274679	34397669
NUDT4B_chr1_148743774_148757415	0/0	c0001	546	98	2	19	75	0	2	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	c0002	546	1	0	0	1	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4B_chr1_148743774_148757415	0/0	c0003	546	1	0	1	0	0	0	copy fasta	NUDT4B	chr1	148743774	148757415
NUDT4_chr12_93372925_93413146	1/1	c0001	543	399	87	75	178	16	41	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	c0002	543	12	9	0	0	0	3	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	c0003	543	1	0	1	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	c0004	543	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT4_chr12_93372925_93413146	0/0	c0005	543	1	1	0	0	0	0	copy fasta	NUDT4	chr12	93372925	93413146
NUDT5_chr10_12160330_12200891	0/0	c0001	660	197	33	46	97	8	13	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	1/1	c0002	660	196	49	27	93	4	21	copy fasta	NUDT5	chr10	12160330	12200891
NUDT5_chr10_12160330_12200891	0/0	c0003	660	1	0	1	0	0	0	copy fasta	NUDT5	chr10	12160330	12200891
NUDT6_chr4_122887577_122927597	0/0	c0001	951	115	10	26	63	5	11	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0002	951	107	2	12	70	6	17	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	1/0	c0003	951	90	50	18	17	1	3	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/1	c0004	951	44	18	12	2	2	9	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0005	951	6	5	1	0	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0006	951	2	2	0	0	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0007	951	1	0	0	1	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0008	951	1	0	0	1	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0009	951	1	0	1	0	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT6_chr4_122887577_122927597	0/0	c0010	951	1	1	0	0	0	0	copy fasta	NUDT6	chr4	122887577	122927597
NUDT7_chr16_77717514_77747260	1/1	c0001	717	286	76	56	113	10	29	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0002	717	105	7	12	68	2	16	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0003	717	51	6	6	34	3	2	copy fasta	NUDT7	chr16	77717514	77747260