JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APPL1_chr3_57222729_57278471	0/0	c0003	2130	6	6	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0004	2130	5	4	1	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0005	2130	2	2	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0006	2130	1	0	0	0	0	1	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0007	2130	1	0	0	1	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0008	2130	1	0	0	1	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0009	2130	1	0	1	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0010	2130	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	c0011	2130	1	0	1	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL2_chr12_105168300_105241174	0/1	c0001	1995	211	31	40	106	6	27	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0002	1995	82	10	19	43	2	8	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0003	1995	36	27	7	1	0	1	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0004	1995	16	0	0	16	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	1/0	c0005	1995	15	6	4	0	4	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0006	1995	12	9	3	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0007	1995	3	3	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0008	1995	2	0	0	2	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0009	1995	2	2	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0010	1995	2	0	2	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0011	1995	2	2	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0012	1995	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0013	1995	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0014	1995	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0015	1995	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0016	1995	1	0	0	0	0	1	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0017	1995	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0018	1995	1	0	0	0	0	1	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0019	1995	1	0	1	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	c0020	1995	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APRT_chr16_88804339_88816928	1/1	c0001	543	427	83	85	200	16	41	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0002	543	3	0	0	0	2	1	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0003	543	3	3	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0004	543	1	0	0	1	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0005	543	1	0	0	1	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0006	543	1	0	1	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0007	543	1	1	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	c0008	543	1	1	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APTX_chr9_32967616_33006628	1/1	c0001	1029	379	86	63	176	10	42	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	c0002	1029	3	3	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	c0003	1029	2	1	1	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	c0004	1029	2	2	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	c0005	1029	1	0	0	1	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	c0006	1029	1	0	0	1	0	0	copy fasta	APTX	chr9	32967616	33006628
AQP10_chr1_154316093_154330325	1/1	c0001	906	148	15	31	81	3	16	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0002	906	114	18	18	56	5	17	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0003	906	107	40	24	29	4	10	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0004	906	9	9	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0005	906	8	8	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0006	906	3	1	0	0	2	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0007	906	1	0	1	0	0	0	copy fasta	AQP10	chr1	154316093	154330325