JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUDT7_chr16_77717514_77747260	0/0	c0004	717	6	0	6	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0005	717	4	4	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0006	717	2	2	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0007	717	2	0	0	0	0	2	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0008	717	1	0	0	0	0	1	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0009	717	1	0	0	0	1	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0010	717	1	0	0	1	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0011	717	1	1	0	0	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0012	717	1	0	0	1	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT7_chr16_77717514_77747260	0/0	c0013	717	1	0	0	1	0	0	copy fasta	NUDT7	chr16	77717514	77747260
NUDT8_chr11_67622938_67634937	1/1	c0001	711	195	31	30	105	9	18	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0002	711	85	17	34	22	4	8	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0003	711	58	34	4	13	2	5	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0004	711	16	0	1	15	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0005	711	12	11	1	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0006	711	4	1	0	0	2	1	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0007	711	2	0	2	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0008	711	1	0	0	1	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0009	711	1	1	0	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0010	711	1	0	0	0	1	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT8_chr11_67622938_67634937	0/0	c0011	711	1	1	0	0	0	0	copy fasta	NUDT8	chr11	67622938	67634937
NUDT9_chr4_87417573_87464455	1/1	c0001	1053	352	56	51	196	16	31	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0002	1053	33	32	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0003	1053	10	9	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0004	1053	2	0	2	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0005	1053	2	2	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0007	1053	1	0	0	0	0	1	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	c0008	371	1	0	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUF2_chr1_163316954_163360759	0/1	c0001	1395	176	24	41	75	8	27	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	1/0	c0002	1395	164	46	28	77	2	10	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0003	1395	25	6	5	10	2	2	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0004	1395	15	10	2	0	0	3	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0005	1395	8	4	0	4	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0006	1395	6	0	0	6	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0007	1395	2	0	2	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0008	1395	1	0	1	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0009	1395	1	0	1	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0010	1395	1	1	0	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	c0011	1395	1	1	0	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUFIP1_chr13_44934249_44994471	1/0	c0001	1488	153	56	25	60	2	9	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/1	c0002	1488	113	12	27	56	2	15	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0003	1488	41	13	3	23	0	2	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0004	1488	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0005	1488	1	0	0	0	0	1	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0006	1488	1	0	0	0	0	1	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0007	1488	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0008	1488	1	0	1	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0009	1488	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0010	1488	1	0	1	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471