JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUFIP1_chr13_44934249_44994471	0/0	c0011	1488	1	0	0	1	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	c0012	1488	1	0	1	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP2_chr17_29250839_29299148	1/1	c0001	2088	286	68	47	135	8	26	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0002	2088	47	4	19	3	5	16	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0003	2088	8	7	1	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0004	2088	7	7	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0005	2088	3	0	0	3	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0006	2088	2	2	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0007	2088	1	0	0	0	1	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0008	2088	1	0	1	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	c0009	2088	1	0	0	1	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUGGC_chr8_28016964_28088936	0/1	c0001	2391	59	8	11	34	2	3	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0002	2391	57	0	10	41	2	4	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0003	2391	49	3	13	19	6	8	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0004	2391	31	2	2	24	0	3	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0005	2391	30	5	4	17	1	3	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0006	2391	27	3	5	13	2	4	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0007	2391	19	3	4	4	2	6	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0008	2391	15	1	8	5	1	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0009	2391	8	0	1	5	0	2	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0010	2391	6	1	2	1	0	2	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0011	2391	5	4	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0012	2391	5	5	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0013	2391	4	4	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0014	2391	4	4	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0015	2391	4	0	0	4	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0016	2391	4	0	2	1	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0017	2391	3	0	0	3	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0018	2391	3	3	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0019	2391	3	1	1	0	1	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0020	2391	3	0	3	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0021	2391	3	3	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0022	2391	3	2	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0023	2391	2	1	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0024	2391	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0025	2391	2	0	0	0	0	2	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0026	2391	2	1	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0027	2391	2	0	0	2	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0028	2391	2	0	2	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0029	2391	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0030	2391	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0031	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0032	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0033	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0034	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0035	2391	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0036	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0037	2391	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0038	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0039	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936