JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUGGC_chr8_28016964_28088936	0/0	c0040	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0041	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0042	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0043	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0044	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0045	2391	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0046	2391	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0047	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0048	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0049	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0050	2391	1	0	0	0	1	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0051	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0052	2391	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0053	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0054	2391	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0055	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0056	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0057	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0058	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0059	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0060	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0061	2391	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0062	2391	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0063	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0064	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0065	2391	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0066	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0067	2391	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0068	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	1/0	c0069	2391	1	0	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0070	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0071	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0072	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0073	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0074	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0075	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	c0076	2391	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUMA1_chr11_71997864_72085542	1/1	c0001	6348	149	26	27	69	6	19	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0002	6348	13	0	2	4	0	7	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0003	6348	11	10	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0004	6348	10	9	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0005	6348	6	6	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0006	6348	6	6	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0007	6348	5	0	3	2	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0008	6348	5	1	0	4	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0009	6348	4	0	2	2	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0010	6348	3	3	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0011	6348	3	0	0	3	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0012	6348	3	3	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0013	6348	2	2	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542