JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUMA1_chr11_71997864_72085542	0/0	c0014	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0015	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0016	6348	1	0	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0017	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0018	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0019	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0020	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0021	6327	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0022	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0023	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0024	6348	1	0	0	0	0	1	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0025	6378	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0026	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0027	6348	1	0	0	0	0	1	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0028	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0029	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0030	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0031	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0032	6348	1	0	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0033	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0034	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0035	6348	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0036	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	c0037	6348	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMBL_chr19_40660905_40695651	0/1	c0001	1824	213	77	39	71	7	18	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	1/0	c0002	1830	115	2	27	69	3	13	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0003	1824	62	3	2	48	0	9	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0004	1824	6	6	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0005	1824	4	0	2	0	2	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0006	1824	3	0	0	3	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0007	1824	3	3	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0008	1824	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0009	1824	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0010	1855	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0011	1830	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0012	1812	1	0	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0013	1824	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0014	1824	1	0	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	c0015	1824	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMB_chr14_73270216_73463546	1/1	c0001	1956	296	69	57	115	8	45	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	c0002	1956	9	8	1	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	c0003	1956	7	7	0	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	c0004	1956	6	4	2	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	c0005	1956	2	0	2	0	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	c0006	1956	1	0	0	1	0	0	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	c0007	1956	1	0	0	0	0	1	copy fasta	NUMB	chr14	73270216	73463546
NUP107_chr12_68681978_68750809	1/0	c0001	2778	286	67	37	147	10	24	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/1	c0002	2778	90	6	20	54	5	4	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0003	2778	8	5	1	0	0	2	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0004	2778	3	0	0	0	3	0	copy fasta	NUP107	chr12	68681978	68750809