JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP107_chr12_68681978_68750809	0/0	c0005	2778	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0006	2778	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0007	2778	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0008	2778	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0009	2778	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0010	2778	1	1	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0011	2778	1	0	0	0	0	1	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0012	2778	1	1	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0013	2778	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0014	2778	1	0	0	0	0	1	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	c0015	2778	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP133_chr1_229435259_229513341	1/0	c0001	3471	155	28	32	67	8	19	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/1	c0002	3471	36	1	11	18	2	3	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0003	3471	33	30	1	1	1	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0004	3471	14	0	13	0	0	1	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0005	3471	12	12	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0006	3471	8	8	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0007	3471	4	0	1	0	1	2	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0008	3471	2	2	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0009	3471	2	2	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0010	3471	2	0	0	0	0	2	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0011	3471	2	1	1	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0012	3471	2	0	0	2	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0013	3471	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0014	3471	1	0	0	0	0	1	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0015	3471	1	0	1	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	c0016	3471	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP153_chr6_17610037_17711925	0/0	c0001	4428	67	17	10	35	1	4	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0002	4428	52	10	1	39	0	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0003	4428	43	0	7	30	0	6	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0004	4428	30	19	3	4	2	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0005	4428	29	2	10	11	4	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/1	c0006	4428	19	1	4	10	1	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0007	4428	18	4	7	1	4	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0008	4428	9	9	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0009	4428	7	7	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0010	4428	7	5	1	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0011	4428	5	5	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0012	4428	4	1	2	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0013	4428	3	0	0	3	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0014	4428	2	2	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0015	4428	2	1	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0016	4428	2	0	2	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0017	4428	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0018	4428	1	0	0	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0019	4428	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0020	4428	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0021	4428	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0022	4428	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	1/0	c0023	4428	1	0	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925