JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP153_chr6_17610037_17711925	0/0	c0024	4428	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0025	4428	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0026	4428	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0027	4428	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0028	4428	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0029	4428	1	0	0	0	1	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0030	4428	1	0	0	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0031	4428	1	0	0	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0032	4428	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	c0033	4428	1	0	0	0	1	0	copy fasta	NUP153	chr6	17610037	17711925
NUP155_chr5_37283137_37376106	0/0	c0001	4176	96	6	22	55	5	8	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0002	4176	91	54	11	12	3	11	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/1	c0003	4176	79	2	15	45	4	12	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0004	4176	8	8	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0005	4176	7	7	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0006	4176	2	1	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0007	4176	2	0	2	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0008	4176	2	0	0	2	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0009	4176	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0010	4176	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0011	4176	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0012	4176	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0013	4176	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0014	4176	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0015	4176	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0016	4176	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0017	4176	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0018	4176	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	1/0	c0019	4176	1	0	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0020	4176	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	c0021	4176	1	0	0	0	0	1	copy fasta	NUP155	chr5	37283137	37376106
NUP160_chr11_47773118_47853350	0/1	c0001	4209	217	67	31	90	6	22	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0002	4209	82	8	27	25	4	18	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0003	4209	14	0	0	14	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	1/0	c0004	4209	5	4	0	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0005	4209	5	0	0	4	1	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0006	4209	4	4	0	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0007	4209	2	0	2	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0008	4209	2	0	0	2	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0009	4209	1	0	0	1	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0010	4209	1	0	1	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0011	4111	1	0	0	1	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0012	4209	1	0	1	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0013	4209	1	0	0	1	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0014	4209	1	0	0	0	1	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	c0015	4209	1	1	0	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP188_chr9_128942699_129012096	1/0	c0001	5250	137	32	24	54	6	20	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/1	c0002	5250	98	17	27	38	6	9	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0003	5250	14	0	0	12	0	2	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0004	5250	10	9	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096