JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP188_chr9_128942699_129012096	0/0	c0005	5250	5	5	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0006	5250	4	4	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0007	5250	2	2	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0008	5250	2	2	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0009	5250	2	2	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0010	5250	2	0	2	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0011	5250	1	0	0	0	1	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0012	5250	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0013	5250	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0014	5250	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0015	5250	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0016	5250	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0017	5250	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0018	5250	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0019	5250	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0020	5250	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0021	5250	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0022	5250	1	0	0	0	1	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0023	5250	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0024	5250	1	1	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0025	5250	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0026	5250	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0027	5250	1	1	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0028	5250	1	1	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0029	5250	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	c0030	5250	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP205_chr7_135552917_135653753	0/0	c0001	6039	104	30	18	48	4	4	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/1	c0002	6039	97	19	16	39	6	16	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0003	6039	57	4	13	33	1	6	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0004	6039	19	10	1	5	0	3	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0005	6039	13	0	0	10	0	3	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0006	6039	12	3	3	1	1	4	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	1/0	c0007	6039	5	4	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0008	6039	4	0	0	4	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0009	6039	4	4	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0010	6039	3	0	0	0	0	3	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0011	6039	2	0	2	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0012	6039	2	0	0	2	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0013	6039	2	0	0	0	0	2	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0014	6039	2	0	2	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0015	6039	2	2	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0016	6039	2	0	2	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0017	6039	2	0	0	0	2	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0018	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0019	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0020	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0021	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0022	6039	1	0	1	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0023	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0024	6039	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753