JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP205_chr7_135552917_135653753	0/0	c0025	6039	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0026	6039	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0027	6039	1	0	1	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0028	6039	1	0	0	0	0	1	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0029	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0030	6039	1	0	1	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0031	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0032	6039	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0033	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0034	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0035	6039	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0036	6039	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	c0037	6039	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP210L_chr1_153987690_154160073	0/1	c0001	5667	174	42	29	75	7	20	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0002	5667	71	12	13	38	1	7	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	1/0	c0003	5667	14	13	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0004	5667	7	6	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0005	5667	4	0	4	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0006	5667	3	3	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0007	5667	2	0	0	0	0	2	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0008	5667	2	2	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0009	5667	2	0	0	2	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0010	5667	1	0	0	1	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0011	5667	1	0	0	1	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0012	5667	1	0	0	1	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0013	5667	1	0	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0014	5667	1	0	0	0	0	1	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0015	5667	1	0	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0016	5667	1	0	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0017	5667	1	1	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0018	5667	1	0	0	0	0	1	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0019	5667	1	0	0	0	0	1	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	c0020	5667	1	1	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210_chr3_13311235_13425322	0/1	c0001	5664	101	9	19	55	6	11	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0002	5664	83	16	16	43	3	5	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0003	5664	29	4	10	4	1	10	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0004	5664	26	7	1	13	2	3	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0005	5664	16	15	1	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0006	5664	14	10	1	1	0	2	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0007	5664	14	6	7	0	1	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0008	5664	4	0	1	3	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0009	5664	3	3	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0010	5664	2	2	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0011	5664	2	2	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0012	5664	2	0	2	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0013	5664	2	0	0	2	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0014	5664	2	0	0	2	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0015	5664	2	1	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0016	5664	2	2	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0017	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322