JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP210_chr3_13311235_13425322	0/0	c0018	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0019	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0020	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0021	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0022	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0023	5664	1	0	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0024	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0025	5664	1	0	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0026	5664	1	0	0	0	1	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0027	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0028	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0029	5664	1	0	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0030	5664	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0031	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0032	5664	1	0	1	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0033	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	1/0	c0034	5664	1	0	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0035	5664	1	0	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0036	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0037	5664	1	0	1	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	c0038	5664	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP214_chr9_131120586_131239663	0/1	c0001	6273	80	19	19	25	4	12	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0002	6273	74	6	15	35	3	15	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	1/0	c0003	6273	21	13	2	5	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0004	6273	13	3	1	6	1	2	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0005	6273	5	4	1	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0006	6273	4	0	0	4	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0007	6273	3	3	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0008	6273	3	3	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0009	6273	3	0	0	3	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0010	6273	3	2	1	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0011	6273	3	1	0	0	0	2	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0012	6273	3	2	1	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0013	6273	2	1	0	0	0	1	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0014	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0015	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0016	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0017	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0018	6273	1	0	0	0	0	1	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0019	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0020	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0021	6273	1	0	0	0	0	1	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0022	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0023	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0024	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0025	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0026	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0027	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0028	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	c0029	6273	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663