JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP214_chr9_131120586_131239663	0/0	c0030	6273	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP35_chr2_183119443_183166680	1/1	c0001	981	395	82	62	192	18	39	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	c0002	981	4	4	0	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	c0003	981	1	1	0	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	c0004	981	1	0	0	0	0	1	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	c0005	981	1	1	0	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP37_chr12_102068103_102125114	1/1	c0001	981	390	91	68	179	15	35	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	c0002	981	3	1	0	0	1	1	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	c0003	981	1	0	0	1	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	c0004	981	1	0	0	1	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	c0005	981	1	0	0	0	0	1	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	c0006	981	1	0	0	0	0	1	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	c0007	981	1	0	0	1	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP42_chr7_23177048_23206006	1/1	c0001	1272	294	54	45	147	12	34	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0002	1272	27	11	6	4	0	6	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0003	1272	17	14	3	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0004	1272	12	0	6	0	2	4	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0005	1272	9	9	0	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0006	1284	3	0	3	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0007	1272	1	0	1	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	c0008	1272	1	0	0	1	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP43_chr6_149719315_149751529	1/1	c0001	1143	317	75	66	125	10	39	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	c0002	1143	8	8	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	c0003	1143	1	0	0	0	0	1	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	c0004	1143	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	c0005	913	1	0	0	1	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP50_chr22_45158925_45193017	1/1	c0001	1407	263	69	60	88	10	34	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0002	1407	156	23	16	103	5	9	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0003	1407	5	4	1	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0004	1407	3	0	2	0	1	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0005	1407	1	1	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0006	1407	1	1	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0007	1407	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0008	1407	1	0	1	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	c0009	1407	1	0	0	0	0	1	copy fasta	NUP50	chr22	45158925	45193017
NUP54_chr4_76109664_76153397	1/1	c0001	1524	214	45	43	89	12	23	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0002	1527	85	5	12	61	1	6	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0003	1524	39	18	13	3	3	2	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0004	1524	25	11	0	14	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0005	1524	4	4	0	0	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0007	1527	1	0	0	0	0	1	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	c0008	1524	1	1	0	0	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP58_chr13_25296625_25347421	1/0	c0001	1800	198	66	32	66	11	22	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0002	1800	115	11	17	70	5	12	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0003	1800	14	0	1	13	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0004	1800	7	7	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0005	1800	4	4	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0006	1800	4	0	4	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/1	c0007	1800	2	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421