JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AQP10_chr1_154316093_154330325	0/0	c0008	906	1	0	0	0	0	1	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0009	906	1	1	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0010	906	1	0	0	1	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	c0011	906	1	0	0	1	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP11_chr11_77584953_77615356	1/1	c0001	816	337	67	60	146	15	47	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0002	816	74	18	14	41	1	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0003	816	8	0	0	8	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0004	816	5	4	1	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0005	816	2	0	0	2	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0006	816	2	0	2	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0007	816	1	0	0	0	0	1	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0008	816	1	0	1	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0009	816	1	0	0	1	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	c0010	816	1	1	0	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP12A_chr2_240686866_240703483	1/0	c0001	888	51	6	3	34	1	6	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0002	888	28	0	12	15	0	1	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0003	888	18	2	7	0	6	3	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0004	888	12	1	2	3	1	5	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0005	888	10	6	0	3	1	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0006	888	10	0	2	1	2	5	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0007	888	6	4	1	1	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0008	888	5	1	4	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0009	888	5	0	2	2	1	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0010	888	5	0	0	0	2	3	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0011	888	2	2	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0012	888	2	2	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0013	888	2	2	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0014	888	2	0	2	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0015	888	2	0	2	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0016	888	2	0	0	2	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0017	888	1	0	1	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0018	888	1	0	0	0	0	1	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0019	888	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0020	888	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0021	888	1	0	0	1	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0022	888	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0023	888	1	1	0	0	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0024	888	1	0	0	1	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	c0025	888	1	0	0	1	0	0	copy fasta	AQP12A	chr2	240686866	240703483
AQP12B_chr2_240671418_240687885	1/0	c0001	924	60	3	5	42	2	7	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0002	924	45	2	15	21	1	6	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0003	924	31	12	10	1	5	3	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0004	924	9	1	3	0	2	3	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0005	924	9	0	1	1	2	5	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0006	923	4	2	0	2	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0007	924	3	2	1	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0008	924	3	2	0	0	0	1	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0009	924	2	0	0	2	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0010	924	2	2	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0011	924	2	2	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885