JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP58_chr13_25296625_25347421	0/0	c0008	1800	1	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0009	1800	1	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0010	1800	1	1	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0011	1788	1	0	0	1	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0012	1800	1	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	c0013	1800	1	1	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP62CL_chrX_107118427_107211433	0/1	c0001	555	152	63	19	61	2	6	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	1/0	c0002	555	123	3	24	72	7	16	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	c0003	555	2	2	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	c0004	555	1	0	0	1	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	c0005	555	1	1	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	c0006	555	1	1	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62_chr19_49901825_49934504	0/1	c0001	1569	209	53	42	85	3	25	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0002	1569	123	21	24	64	5	9	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0003	1569	25	0	7	9	1	8	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0004	1569	22	2	1	18	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0005	1572	6	6	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	1/0	c0006	1569	6	0	4	0	1	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0007	1569	4	3	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0008	1569	3	3	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0009	1569	3	0	0	3	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0010	1569	2	0	0	2	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0011	1569	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0012	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0013	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0014	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0015	1569	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0016	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0017	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0018	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0019	1569	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0020	1569	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0021	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0022	1569	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	c0023	1569	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP85_chr17_75200679_75240758	0/1	c0001	1971	180	62	40	43	8	26	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0002	1971	45	17	9	11	0	8	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0003	1971	24	0	6	10	4	4	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	1/0	c0004	1971	9	8	0	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0005	1971	8	1	5	0	1	1	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0006	1971	3	3	0	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0007	1971	1	0	0	0	0	1	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0008	1971	1	0	1	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0009	1971	1	0	1	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0010	1971	1	0	0	0	0	1	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0011	1971	1	0	0	0	0	1	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0012	1971	1	1	0	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	c0013	1971	1	0	0	0	1	0	copy fasta	NUP85	chr17	75200679	75240758
NUP88_chr17_5379833_5424662	1/1	c0001	2226	141	42	39	33	10	15	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0002	2226	109	33	9	55	1	11	copy fasta	NUP88	chr17	5379833	5424662