JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP88_chr17_5379833_5424662	0/0	c0003	2226	97	1	17	59	5	15	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0004	2226	6	6	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0005	2226	3	0	3	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0006	2226	2	0	2	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0007	2226	2	2	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0008	2226	1	1	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0009	2226	1	0	1	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0010	2226	1	1	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0011	2226	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0012	2226	1	0	1	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0013	2226	1	0	0	0	0	1	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0014	2226	1	0	0	0	0	1	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0015	2226	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0016	2226	1	0	0	0	0	1	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	c0017	2226	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP93_chr16_56725129_56855286	0/0	c0001	2460	189	42	29	88	9	21	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0002	2460	68	12	14	32	3	7	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/1	c0003	2460	42	4	11	24	1	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	1/0	c0004	2460	39	4	11	15	1	7	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0005	2460	8	8	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0006	2460	5	5	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0007	2460	4	4	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0008	2460	4	0	0	4	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0009	2460	2	2	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0010	2460	2	2	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0011	2460	2	2	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0012	2460	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0013	2460	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0014	2460	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0015	2460	1	0	1	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0016	2460	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0017	2460	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0018	2460	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0019	2460	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0020	2460	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0021	2460	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0022	2460	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0023	2460	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	c0024	2460	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP98_chr11_3670019_3802554	1/0	c0001	5403	181	43	30	82	3	22	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0002	5403	96	18	6	62	2	8	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0003	5403	7	6	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0004	5403	6	6	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0005	5403	6	0	4	0	1	1	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/1	c0006	5403	5	2	2	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0007	5403	4	0	0	4	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0008	5403	4	0	3	0	0	1	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0009	5403	3	3	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0010	5403	2	2	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0011	5403	2	0	0	0	0	2	copy fasta	NUP98	chr11	3670019	3802554