JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUP98_chr11_3670019_3802554	0/0	c0012	5403	2	2	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0013	5403	2	0	2	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0014	5403	2	0	0	2	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0015	5403	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0016	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0017	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0018	5403	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0019	5403	1	0	0	0	0	1	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0020	5403	1	0	0	0	0	1	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0021	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0022	5403	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0023	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0024	5403	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0025	5403	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0026	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0027	5403	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0028	5403	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0029	5403	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0030	5403	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0031	5403	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0032	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0033	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	c0034	5403	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUPR1_chr16_28527708_28543974	1/1	c0001	249	366	84	72	164	12	32	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	c0002	249	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR2_chr7_56109681_56121417	1/1	c0001	294	440	89	80	207	18	44	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	c0002	294	6	6	0	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	c0003	294	1	0	0	1	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	c0004	294	1	1	0	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUS1_chr6_117670469_117715727	1/1	c0001	882	398	78	68	190	16	44	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	c0002	882	18	18	0	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	c0003	882	5	0	0	5	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	c0004	882	4	0	0	4	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	c0005	882	3	0	0	3	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	c0006	882	2	0	2	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUSAP1_chr15_41327881_41386046	1/1	c0001	1326	175	32	32	71	6	32	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	c0002	1326	83	41	13	23	3	3	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	c0003	1326	24	0	9	1	5	9	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	c0004	1326	6	4	2	0	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	c0005	1326	2	2	0	0	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	c0006	1326	1	1	0	0	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	c0007	1326	1	0	0	1	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUTF2_chr16_67841933_67877567	1/1	c0001	384	246	82	52	72	6	32	copy fasta	NUTF2	chr16	67841933	67877567
NUTF2_chr16_67841933_67877567	0/0	c0002	384	2	2	0	0	0	0	copy fasta	NUTF2	chr16	67841933	67877567
NUTM1_chr15_34338315_34362735	0/1	c0001	3483	178	40	37	57	12	31	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0002	3483	75	0	17	52	1	5	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0003	3483	70	2	7	56	2	3	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0004	3483	30	0	7	22	1	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	1/0	c0005	3483	20	17	2	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0006	3483	13	13	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735