JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM1_chr15_34338315_34362735	0/0	c0007	3483	10	0	1	9	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0008	3483	7	1	1	4	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0009	3483	6	6	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0010	3483	5	5	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0011	3483	3	3	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0012	3483	2	1	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0013	3483	2	2	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0014	3483	2	0	0	0	0	2	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0015	3483	2	0	0	2	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0016	3483	2	2	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0017	3483	2	2	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0018	3483	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0019	3483	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0020	3483	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0021	3483	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0022	3483	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0023	3483	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0024	3483	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0025	3483	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0026	3483	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0027	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0028	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0029	3483	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0030	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0031	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0032	3483	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0033	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0034	3483	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0035	3483	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0036	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0037	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0038	3483	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0039	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0040	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0041	3483	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	c0042	3483	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM2A_chr10_87220448_87239978	0/0	c0001	2636	136	4	33	91	0	8	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0002	2636	33	2	9	12	3	7	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0003	2633	29	0	0	29	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0004	2636	25	10	10	0	1	4	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0005	2636	17	1	5	4	1	6	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0006	2636	13	0	1	9	2	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0007	2636	13	2	0	8	0	3	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0008	2636	7	0	4	0	2	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0009	2636	7	7	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0010	2636	5	0	0	5	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0011	2636	5	2	0	3	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	1/0	c0012	2637	4	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0013	2637	4	3	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0014	2633	4	0	4	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978