JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2A_chr10_87220448_87239978	0/0	c0015	2636	4	0	1	0	2	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0016	2637	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0017	2636	3	1	1	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0018	2636	3	0	2	0	1	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0019	2636	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0020	2636	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0021	2636	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0022	2637	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0023	2637	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0024	2636	2	1	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0025	2636	2	0	0	0	2	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0026	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0027	2636	2	0	0	2	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0028	2633	2	0	0	2	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0029	2636	2	0	0	2	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0030	2636	2	0	2	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0031	2636	2	0	0	2	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0032	2636	2	1	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0033	2636	2	0	0	0	0	2	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0034	2636	2	0	0	1	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0035	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0036	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0037	2636	2	0	0	2	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0038	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0039	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0040	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0041	2636	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0042	2637	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0043	2637	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0044	2637	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0045	2637	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0046	2637	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0047	2637	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0048	2637	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0049	2633	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0050	2636	1	0	0	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0051	2636	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0052	2636	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0053	2636	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0054	2636	1	0	0	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0055	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0056	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0057	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0058	2636	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0059	2636	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0060	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0061	2636	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0062	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0063	2636	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0064	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978