JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2A_chr10_87220448_87239978	0/0	c0065	2636	1	0	0	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0066	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0067	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0068	2636	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0069	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0070	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0071	2636	1	0	0	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0072	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0073	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0074	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0075	2636	1	0	0	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0076	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0077	2636	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0078	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0079	2636	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	c0080	2636	1	0	0	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2B_chr10_79698227_79717758	1/0	c0001	2637	103	16	32	30	11	13	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0002	2637	20	1	9	9	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0003	2637	19	1	3	9	1	5	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0004	2637	18	6	4	6	2	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0005	2637	18	16	2	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0006	2637	12	2	5	1	0	4	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0007	2637	10	0	0	10	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0008	2625	9	9	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0009	2637	9	3	5	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0010	2637	7	0	0	7	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0011	2637	5	0	0	5	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0012	2637	5	5	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0013	2637	5	5	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0014	2625	4	4	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0015	2625	3	3	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0016	2637	3	0	0	3	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0017	2637	3	3	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0018	2637	3	0	0	3	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0019	2637	3	0	2	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0020	2637	3	3	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0021	2637	3	0	2	0	1	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0022	2637	3	3	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0023	2637	3	2	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0024	2625	2	2	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0025	2637	2	0	0	1	1	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0026	2637	2	0	0	2	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0027	2637	2	0	1	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0028	2637	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0029	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0030	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0031	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0032	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0033	2625	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0034	2637	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758