JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2B_chr10_79698227_79717758	0/0	c0035	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0036	2625	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0037	2637	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0038	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0039	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0040	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0041	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0042	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0043	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0044	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0045	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0046	2637	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0047	2637	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0048	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0049	2637	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0050	2637	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0051	2637	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0052	2637	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	c0053	2637	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2D_chr10_87352744_87372195	0/0	c0001	2421	129	3	24	98	1	3	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0002	2421	46	2	12	23	1	8	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0003	2421	30	5	10	8	4	3	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0004	2421	29	14	9	0	1	5	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0005	2421	22	12	5	0	4	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0006	2421	19	9	3	6	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0007	2421	18	4	3	7	0	4	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0008	2421	14	0	0	14	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0009	2421	12	2	2	1	2	5	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0010	2421	7	1	4	0	1	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0011	2421	6	0	1	4	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0012	2421	6	0	3	0	1	2	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0013	2421	6	6	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0014	2421	5	5	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0015	2421	5	5	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0016	2421	4	0	0	4	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0017	2421	4	4	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0018	2421	3	2	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0019	2421	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0020	2421	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0021	2421	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0022	2421	2	2	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	1/0	c0023	2421	2	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0024	2421	2	0	0	2	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0025	2421	2	0	2	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0026	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0027	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0028	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0029	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0030	2421	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0031	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195