JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2D_chr10_87352744_87372195	0/0	c0032	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0033	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0034	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0035	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0036	2421	1	0	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0037	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0038	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0039	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0040	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0041	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0042	2421	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0043	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0044	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0045	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0046	2421	1	0	0	0	1	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0047	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0048	2421	1	0	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0049	2421	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0050	2421	1	0	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0051	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0052	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0053	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0054	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0055	2421	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0056	2421	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0057	2421	1	0	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	c0058	2421	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2E_chr10_79821739_79855878	0/1	c0001	2637	124	20	24	59	9	11	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0002	2637	56	0	5	42	1	8	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0003	2637	36	1	9	21	0	5	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0004	2637	24	1	2	21	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0005	2637	17	1	8	5	0	3	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	1/0	c0006	2637	17	15	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0007	2637	13	3	0	10	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0008	2637	11	2	4	4	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0009	2637	10	8	2	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0010	2637	8	8	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0011	2637	8	0	0	8	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0012	2637	8	1	2	4	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0013	2637	7	7	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0014	2637	5	0	0	5	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0015	2637	5	5	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0016	2637	5	0	3	1	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0017	2637	4	4	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0018	2637	3	0	3	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0019	2637	3	1	1	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0020	2637	3	0	0	3	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0021	2637	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0022	2637	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0023	2637	2	0	2	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878