JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2E_chr10_79821739_79855878	0/0	c0024	2637	2	0	1	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0025	2637	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0026	2637	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0027	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0028	2637	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0029	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0030	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0031	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0032	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0033	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0034	2637	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0035	2637	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0036	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0037	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0038	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0039	2637	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0040	2637	1	0	0	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0041	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0042	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0043	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0044	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0045	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0046	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0047	2637	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0048	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0049	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0050	2637	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0051	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0052	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0053	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0054	2637	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0055	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0056	2637	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0057	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0058	2637	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	c0059	2637	1	0	0	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2F_chr9_94313198_94333644	0/1	c0001	2268	158	20	25	75	12	25	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0002	2268	74	10	14	38	1	11	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	1/0	c0003	2271	23	2	12	0	3	5	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0004	2268	9	3	2	2	0	2	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0005	2268	7	0	3	0	1	3	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0006	2268	7	2	5	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0007	2271	6	6	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0008	2268	6	1	0	5	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0009	2271	5	4	1	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0010	2268	4	2	1	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0011	2268	3	0	0	3	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0012	2271	2	0	1	0	1	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0013	2268	2	0	0	2	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0014	2271	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644