JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2F_chr9_94313198_94333644	0/0	c0015	2271	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0016	2268	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0017	2268	1	0	1	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0018	2268	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0019	2268	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0020	2268	1	0	1	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0021	2268	1	0	0	0	0	1	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0022	2268	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0023	2268	1	0	0	0	0	1	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0024	2268	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0025	2268	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0026	2268	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0027	2268	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0028	2268	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	c0029	2268	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2G_chr9_96923843_96944416	1/1	c0001	2226	198	46	40	83	9	18	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0002	2220	59	0	0	54	0	5	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0003	2226	32	0	16	9	2	5	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0004	2226	24	19	1	0	0	4	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0005	2226	6	0	3	0	1	2	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0006	2226	6	3	3	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0007	2220	5	5	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0008	2226	4	4	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0009	2223	3	2	1	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0010	2226	3	3	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0011	2220	2	2	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0012	2226	2	0	2	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0013	2226	2	0	2	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0014	2226	2	1	1	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0015	2226	2	0	0	2	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0016	2226	2	2	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0017	2226	2	0	0	2	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0018	2220	2	0	0	2	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0019	2220	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0020	2226	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0021	2220	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0022	2226	1	0	0	0	0	1	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0023	2226	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0024	2226	1	0	0	0	0	1	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0025	2226	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0026	2226	1	0	0	0	1	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0027	2226	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0028	2226	1	0	1	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0029	2226	1	0	0	0	1	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0030	2226	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0031	2226	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0032	2220	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0033	2226	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0034	2226	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	c0035	2226	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416