JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AQP12B_chr2_240671418_240687885	0/0	c0012	924	2	0	2	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0013	924	2	0	1	1	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0014	924	1	0	0	0	1	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0015	924	1	1	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0016	924	1	0	0	0	1	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0017	924	1	1	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	c0018	924	1	0	0	0	0	1	copy fasta	AQP12B	chr2	240671418	240687885
AQP1_chr7_30906853_30930516	1/1	c0001	810	414	96	76	184	10	46	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0002	810	9	0	6	0	0	3	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0003	810	2	0	1	1	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0004	810	2	0	0	2	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0005	810	1	0	0	0	0	1	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0006	810	1	0	1	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0007	810	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0008	810	1	0	0	1	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	c0009	810	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP2_chr12_49945737_49963878	0/1	c0001	816	281	37	66	136	15	26	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	1/0	c0002	816	141	46	14	62	1	17	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0003	816	4	4	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0004	816	4	4	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0005	816	3	3	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0006	816	2	0	0	2	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0007	816	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0008	816	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0009	816	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0010	816	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0011	816	1	0	0	0	0	1	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	c0012	816	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP3_chr9_33436160_33452593	0/1	c0001	879	294	71	52	125	13	32	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	1/0	c0002	879	90	18	12	46	4	9	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	c0003	879	50	5	14	25	1	5	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	c0004	879	25	4	1	18	0	2	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	c0005	879	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	c0006	879	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	c0007	879	1	0	1	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP4_chr18_26847043_26870707	1/1	c0001	972	407	82	83	187	16	37	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0002	972	9	0	4	0	2	3	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0003	972	7	1	1	0	0	5	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0004	972	4	4	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0005	972	4	4	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0006	972	2	2	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0007	972	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0008	972	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0009	972	1	0	0	0	0	1	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0010	972	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	c0011	972	1	0	0	1	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP5_chr12_49956872_49970682	1/1	c0001	798	455	96	82	213	18	44	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0002	798	2	0	2	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0003	798	2	2	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0004	798	2	0	0	2	0	0	copy fasta	AQP5	chr12	49956872	49970682