JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUTM2G_chr9_96923843_96944416	0/0	c0036	2226	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NVL_chr1_224222345_224335172	0/1	c0001	2571	198	41	42	72	13	29	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	1/0	c0002	2571	45	21	2	14	1	6	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0003	2571	20	18	2	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0004	2571	7	0	0	7	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0005	2571	3	0	0	3	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0006	2571	2	0	1	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0007	2571	2	1	1	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0008	2571	1	0	0	1	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0009	2571	1	0	0	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0010	2571	1	0	0	1	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0011	2571	1	0	0	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0012	2571	1	1	0	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0013	2571	1	1	0	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	c0014	2571	1	1	0	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NWD1_chr19_16714847_16822953	0/0	c0001	4299	50	6	26	13	0	5	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/1	c0002	4299	49	0	8	34	5	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0003	4299	26	2	4	13	2	5	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0004	4299	17	0	5	7	2	3	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0005	4299	15	12	1	0	0	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0006	4299	13	0	6	1	1	5	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0007	4299	10	0	3	5	0	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0008	4299	8	0	2	6	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0009	4299	8	8	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0010	4299	6	6	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0011	4299	5	5	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0012	4299	5	5	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0013	4299	4	3	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0014	4299	4	3	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0015	4299	4	4	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0016	4299	4	0	1	1	0	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0017	4299	4	4	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0018	4299	3	3	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0019	4299	3	1	2	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0020	4299	3	0	0	3	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0021	4299	3	3	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0022	4299	2	0	0	2	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0023	4299	2	0	0	2	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0024	4299	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0025	4299	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0026	4299	2	0	2	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0027	4299	2	0	0	2	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0028	4299	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0029	4299	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0030	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0031	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0032	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0033	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0034	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0035	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953