JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NWD1_chr19_16714847_16822953	0/0	c0036	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0037	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0038	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0039	4299	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0040	4299	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	1/0	c0041	4299	1	0	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0042	4299	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0043	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0044	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0045	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0046	4299	1	0	0	0	1	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0047	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0048	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0049	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0050	4299	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0051	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0052	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0053	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0054	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0055	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0056	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0057	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0058	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0059	4299	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0060	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0061	4299	1	0	0	0	1	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0062	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0063	4299	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0064	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0065	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0066	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0067	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0068	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	c0069	4299	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD2_chr4_37239743_37454463	1/1	c0001	5229	138	25	30	56	2	23	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0002	5229	32	3	9	11	1	8	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0003	5229	22	9	6	3	2	2	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0004	5229	19	6	1	12	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0005	5229	14	3	0	10	1	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0006	5229	12	0	1	6	2	3	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0007	5229	8	1	0	6	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0008	5229	6	6	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0009	5229	6	5	1	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0010	5229	5	4	1	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0011	5229	4	2	2	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0012	5229	3	1	0	2	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0013	5229	2	0	0	0	0	2	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0014	5229	2	1	0	0	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0015	5229	2	2	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0016	5229	2	0	0	2	0	0	copy fasta	NWD2	chr4	37239743	37454463