JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NWD2_chr4_37239743_37454463	0/0	c0017	5229	2	1	0	0	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0018	5229	2	0	0	2	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0019	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0020	5229	1	0	0	1	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0021	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0022	5229	1	0	1	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0023	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0024	5229	1	0	0	1	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0025	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0026	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0027	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0028	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0029	5229	1	0	0	1	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0030	5229	1	0	0	0	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0031	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0032	5229	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	c0033	5229	1	0	0	1	0	0	copy fasta	NWD2	chr4	37239743	37454463
NXF1_chr11_62787130_62810440	0/1	c0001	1860	218	54	37	108	8	10	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	1/0	c0002	1860	177	39	27	78	10	22	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	c0003	1861	5	2	0	3	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	c0004	1861	4	0	1	3	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	c0005	1860	1	1	0	0	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	c0006	1860	1	0	1	0	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF2B_chrX_102355395_102445008	0/0	c0001	1881	53	9	7	33	1	3	copy fasta	NXF2B	chrX	102355395	102445008
NXF2B_chrX_102355395_102445008	0/0	c0002	1881	1	0	0	1	0	0	copy fasta	NXF2B	chrX	102355395	102445008
NXF2_chrX_102242167_102331722	0/0	c0001	1881	33	10	7	11	2	3	copy fasta	NXF2	chrX	102242167	102331722
NXF2_chrX_102242167_102331722	0/0	c0002	1881	5	2	1	0	1	1	copy fasta	NXF2	chrX	102242167	102331722
NXF3_chrX_103070810_103098143	1/1	c0001	1596	292	53	53	142	13	29	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0002	1596	14	13	1	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0003	1596	3	0	0	3	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0004	1596	1	0	0	0	0	1	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0005	1596	1	0	1	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0006	1596	1	1	0	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0007	1598	1	0	0	1	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	c0008	1596	1	1	0	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXNL1_chr19_17450425_17465926	1/1	c0001	639	347	73	60	160	11	41	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0002	639	30	0	7	17	3	3	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0003	639	17	11	1	0	0	5	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0004	639	6	6	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0005	639	2	2	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0006	639	2	0	0	2	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0007	639	1	0	0	1	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0008	664	1	1	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0009	639	1	0	0	0	0	1	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	c0010	639	1	1	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL2_chr9_88530178_88549973	1/1	c0001	471	327	91	54	138	8	34	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	c0002	471	7	7	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	c0003	471	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	c0004	471	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXN_chr17_794310_984776	1/1	c0001	1308	219	45	48	81	6	37	copy fasta	NXN	chr17	794310	984776