JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NXN_chr17_794310_984776	0/0	c0002	1308	7	6	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0003	1308	4	4	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0004	1308	3	3	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0005	1308	2	2	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0006	1308	1	0	0	0	0	1	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0007	1308	1	0	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0008	1284	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0009	1308	1	0	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0010	1308	1	0	1	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0011	1308	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	c0012	1308	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXPE1_chr11_114513934_114564881	0/0	c0001	1644	134	15	19	77	7	16	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	1/1	c0002	1644	116	13	27	56	5	13	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0003	1644	71	45	16	0	1	9	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0004	1644	6	5	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0005	1644	5	5	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0006	1644	4	0	0	4	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0007	1644	3	3	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0008	1644	3	0	0	3	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0009	1644	2	0	2	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0010	1644	2	2	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0011	1644	2	0	0	0	0	2	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0014	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0015	1644	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0016	1644	1	0	0	0	1	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0017	1644	1	0	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0018	1644	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0019	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0020	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0021	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0022	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	c0023	1644	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE2_chr11_114673527_114712069	0/0	c0001	1680	161	45	32	69	4	11	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0002	1680	115	11	25	58	4	17	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	1/0	c0003	1680	64	22	7	22	5	7	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/1	c0004	1680	54	0	5	43	1	4	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0005	1680	8	6	2	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0006	1680	4	4	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0007	1680	3	0	0	0	0	3	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0008	1680	3	1	0	2	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0009	1680	2	2	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0010	1680	2	0	2	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0011	1680	2	0	0	2	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0012	1680	2	0	0	2	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0013	1680	1	0	1	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0014	1680	1	1	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0015	1680	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0016	1680	1	1	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069