JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NXPE2_chr11_114673527_114712069	0/0	c0017	1680	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0018	1680	1	1	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0019	1680	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	c0020	1680	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE3_chr3_101774211_101833231	1/1	c0001	1680	353	90	59	152	13	37	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0002	1680	10	0	0	9	0	1	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0003	1680	5	0	3	1	1	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0004	1680	4	0	0	4	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0005	1680	3	3	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0006	1680	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0007	1680	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0008	1680	1	0	1	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0009	1680	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	c0010	1680	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE4_chr11_114565591_114600786	0/0	c0001	1635	185	20	16	127	6	16	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	1/1	c0002	1635	144	13	37	73	4	15	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0003	1635	59	52	7	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0004	1635	23	0	13	0	1	9	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0005	1635	3	2	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0006	1635	2	2	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0007	1635	2	2	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0008	1635	2	0	2	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0009	1635	1	0	0	1	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0010	1635	1	0	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0011	1635	1	0	0	0	0	1	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0012	1635	1	0	0	0	0	1	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0013	1635	1	0	0	0	1	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0014	1635	1	1	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0015	1635	1	1	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0016	1635	1	0	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0017	1635	1	0	0	0	0	1	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0018	1635	1	1	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0019	1635	1	0	0	1	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	c0020	1635	1	0	0	0	0	1	copy fasta	NXPE4	chr11	114565591	114600786
NXPH1_chr7_8428609_8757961	0/0	c0001	816	206	82	40	61	4	19	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	c0002	816	1	0	0	1	0	0	copy fasta	NXPH1	chr7	8428609	8757961
NXPH1_chr7_8428609_8757961	0/0	c0003	816	1	0	0	0	0	1	copy fasta	NXPH1	chr7	8428609	8757961
NXPH2_chr2_138664157_138785390	0/1	c0001	795	216	71	47	70	6	21	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	1/0	c0002	795	128	8	18	80	6	15	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	c0003	795	2	2	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	c0004	795	2	2	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	c0005	795	1	1	0	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	c0006	795	1	0	1	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH3_chr17_49570871_49588827	1/1	c0001	759	418	98	80	178	17	43	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	c0002	759	1	0	0	0	0	1	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	c0003	759	1	0	0	0	1	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	c0004	759	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	c0005	759	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH4_chr12_57211794_57231449	0/0	c0001	927	208	47	31	96	10	24	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/1	c0002	927	120	19	31	50	4	15	copy fasta	NXPH4	chr12	57211794	57231449