JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NXPH4_chr12_57211794_57231449	0/0	c0003	927	20	3	0	17	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	c0004	930	14	12	2	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	1/0	c0005	927	12	11	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	c0006	927	3	3	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	c0007	927	3	3	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	c0008	927	1	0	0	0	0	1	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	c0009	927	1	0	0	1	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXT1_chr20_23345791_23359771	1/1	c0001	423	420	85	74	204	14	41	copy fasta	NXT1	chr20	23345791	23359771
NXT1_chr20_23345791_23359771	0/0	c0002	423	12	11	1	0	0	0	copy fasta	NXT1	chr20	23345791	23359771
NXT1_chr20_23345791_23359771	0/0	c0003	423	2	0	1	0	0	1	copy fasta	NXT1	chr20	23345791	23359771
NXT2_chrX_109531844_109549698	1/1	c0001	429	294	70	51	128	9	34	copy fasta	NXT2	chrX	109531844	109549698
NYAP1_chr7_100478927_100499802	1/1	c0001	2526	302	51	56	146	12	35	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0002	2526	36	18	6	1	5	6	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0003	2526	3	0	0	0	0	3	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0004	2526	3	0	0	3	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0005	2526	2	2	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0006	2526	2	2	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0007	2526	2	2	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0008	2526	2	0	0	0	0	2	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0009	2526	2	2	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0010	2486	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0011	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0012	2526	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0013	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0014	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0015	2526	1	0	0	0	1	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0016	2526	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0017	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0018	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0019	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0020	2526	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	c0021	2526	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP2_chr2_225394710_225708654	0/0	c0001	2160	50	36	7	3	1	3	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/1	c0002	2160	39	11	9	14	1	3	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0003	2160	23	7	6	9	1	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0004	2160	22	0	8	8	0	6	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0005	2160	17	0	1	11	2	3	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0006	2160	11	10	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0007	2160	11	0	0	11	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	1/0	c0008	2160	4	0	0	2	0	1	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0009	2160	3	0	0	1	0	2	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0010	2160	2	2	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0011	2160	2	1	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0012	2160	1	0	0	0	1	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0013	2160	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0014	2160	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0015	2160	1	0	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0016	2160	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0017	2160	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	c0018	2160	1	1	0	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654