JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NYAP2_chr2_225394710_225708654	0/0	c0019	2160	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYNRIN_chr14_24394003_24424283	1/1	c0001	5697	219	46	36	117	4	14	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0002	5697	61	5	22	11	5	18	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0003	5697	57	0	4	48	1	4	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0004	5697	36	11	1	20	0	4	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0005	5697	29	14	9	0	4	2	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0006	5697	8	8	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0007	5697	7	0	2	0	0	5	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0008	5697	3	0	1	0	1	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0009	5715	3	3	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0010	5697	3	0	0	3	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0011	5697	3	3	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0012	5697	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0013	5697	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0014	5697	2	2	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0015	5697	2	2	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0016	5697	1	0	1	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0017	5697	1	0	0	0	1	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0018	5697	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0019	5715	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0020	5697	1	1	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0021	5697	1	0	0	0	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0022	5713	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0023	5697	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0024	5697	1	0	0	0	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0025	5697	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0026	5697	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0027	5697	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	c0028	5697	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYX_chrX_41442343_41480652	1/1	c0001	1431	280	68	54	117	11	28	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0002	1431	9	0	0	9	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0003	1431	7	5	2	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0004	1431	2	0	0	2	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0005	1431	2	2	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0006	1431	2	2	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0007	1431	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0008	1432	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0009	1432	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0010	1431	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0012	1431	1	0	1	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0013	1432	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
OAF_chr11_120206032_120235334	1/0	c0001	822	197	31	11	133	0	21	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/1	c0002	822	90	34	36	0	8	11	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0003	822	72	20	16	24	1	11	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0004	822	23	2	16	1	1	3	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0005	822	5	5	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0006	822	4	3	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0007	822	2	2	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334