JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OAF_chr11_120206032_120235334	0/0	c0008	822	2	0	0	2	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0009	822	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0010	822	1	0	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0011	822	1	1	0	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0012	822	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	c0013	822	1	0	1	0	0	0	copy fasta	OAF	chr11	120206032	120235334
OARD1_chr6_41059772_41077356	1/1	c0001	459	369	93	64	160	10	40	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	c0002	459	1	1	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OAS1_chr12_112901962_112924903	0/1	c0001	1203	231	20	49	129	8	24	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0002	1203	109	60	13	30	3	3	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	1/0	c0003	1203	68	0	8	40	3	16	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0004	1203	8	0	0	8	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0005	1203	7	3	0	3	0	1	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0006	1203	4	4	0	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0007	1203	2	1	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0008	1203	2	1	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0009	1203	1	0	0	1	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0012	1203	1	0	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	c0013	1203	1	0	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS2_chr12_112973519_113016723	0/0	c0001	2064	242	42	28	134	5	33	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0002	2064	69	16	23	21	4	5	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	1/1	c0003	2064	19	1	8	0	4	4	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0004	2064	17	12	5	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0005	2064	9	8	1	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0006	2064	7	5	2	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0007	2064	5	4	0	0	1	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0008	2064	4	0	0	4	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0009	2064	1	0	1	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0010	2064	1	0	0	0	0	1	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0011	2064	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0012	2064	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0013	2064	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0014	2064	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0015	2064	1	0	0	0	0	1	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	c0016	2064	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS3_chr12_112933474_112978251	0/0	c0001	3264	111	7	16	71	2	15	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0002	3264	45	8	13	18	2	4	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0003	3264	39	18	3	17	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	1/0	c0004	3264	39	0	8	15	2	13	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/1	c0005	3264	25	5	11	1	2	5	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0006	3264	21	19	2	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0007	3264	16	0	12	4	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0008	3264	15	0	0	15	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0009	3264	10	9	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0010	3264	8	4	0	4	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0011	3264	3	3	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0012	3264	3	3	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0013	3264	3	0	0	3	0	0	copy fasta	OAS3	chr12	112933474	112978251