JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OAS3_chr12_112933474_112978251	0/0	c0014	3264	3	0	0	3	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0015	3264	2	0	0	2	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0016	3264	2	2	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0017	3264	2	0	0	0	0	2	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0018	3264	2	1	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0019	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0020	3264	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0021	3264	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0022	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0023	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0024	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0025	3264	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0026	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0027	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0028	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0029	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0030	3264	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0031	3264	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0032	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0033	3264	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0034	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0035	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0036	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0037	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0038	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	c0039	3264	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OASL_chr12_121014111_121044246	1/0	c0001	1545	224	80	47	67	12	17	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/1	c0002	1545	114	8	19	69	4	13	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0003	1545	37	2	3	21	2	9	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0004	1545	5	5	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0005	1545	2	0	0	2	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0006	1545	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0007	1545	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0008	1545	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0009	1545	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0010	1545	1	0	0	0	0	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0011	1545	1	0	1	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0012	1545	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	c0013	1545	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OAT_chr10_124392303_124423923	1/1	c0001	1320	220	81	35	59	12	31	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	c0002	1320	159	13	32	91	4	19	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	c0003	1320	2	0	0	2	0	0	copy fasta	OAT	chr10	124392303	124423923
OAT_chr10_124392303_124423923	0/0	c0004	1320	1	0	1	0	0	0	copy fasta	OAT	chr10	124392303	124423923
OBI1_chr13_78609289_78664155	1/1	c0001	2181	289	92	56	95	10	34	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	c0002	2181	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	c0003	2181	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	c0004	2181	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	c0005	2181	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	c0006	2181	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	c0007	2181	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155