JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OBI1_chr13_78609289_78664155	0/0	c0008	2181	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBP2A_chr9_135541126_135554969	0/0	c0001	513	239	23	50	131	7	28	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0002	513	73	32	10	31	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/1	c0003	513	65	3	15	31	5	10	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0004	513	37	21	6	3	3	4	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0005	513	6	0	1	5	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0006	513	6	6	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0007	513	5	0	0	4	1	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0008	513	4	4	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0009	513	3	0	0	0	2	1	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0010	513	3	0	0	0	0	3	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0011	513	2	0	0	0	0	2	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0012	513	2	1	1	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0013	513	2	2	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0014	513	2	2	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0015	513	1	0	0	1	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0016	513	1	0	0	0	0	1	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0017	513	1	0	0	0	0	1	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0018	513	1	1	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0019	513	1	0	1	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	c0020	513	1	1	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2B_chr9_133200279_133214250	0/0	c0001	513	286	63	54	135	8	26	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	1/0	c0002	513	120	27	8	62	1	21	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0003	513	19	0	10	9	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0004	513	13	1	8	0	3	1	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0005	513	2	0	0	2	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0006	513	2	2	0	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0007	513	2	2	0	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0008	513	1	1	0	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0009	513	1	0	1	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	c0010	513	1	0	1	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBSCN_chr1_228203044_228383876	0/0	c0001	26778	15	1	4	4	2	4	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0002	26778	14	0	7	7	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0003	26778	9	6	3	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0004	26778	8	0	3	5	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0005	26778	7	0	2	5	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0006	26778	5	0	0	5	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0007	26778	4	4	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0008	26778	4	0	0	4	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0009	26778	4	0	0	4	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0010	26778	4	0	3	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0011	26778	4	0	1	3	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0012	26778	3	0	3	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0013	26778	3	0	0	3	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/1	c0014	26778	3	0	0	0	0	2	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0015	26778	3	0	0	3	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0016	26778	3	0	0	3	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0017	26778	3	3	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0018	26778	3	3	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0019	26778	3	3	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876