JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AQP5_chr12_49956872_49970682	0/0	c0005	798	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0006	798	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0007	798	1	1	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0008	798	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	c0009	822	1	1	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP6_chr12_49967947_49982139	1/1	c0001	849	383	78	53	202	17	31	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0002	849	54	7	23	16	1	7	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0003	849	7	7	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0004	849	6	5	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0005	849	2	2	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0006	849	2	1	0	0	0	1	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0007	849	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0008	849	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0009	849	1	0	0	0	0	1	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	c0010	849	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP7B_chr2_94582311_94609628	1/1	c0001	1041	351	80	74	146	13	36	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0002	1041	8	8	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0003	1041	4	0	0	4	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0004	1041	3	3	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0005	1041	3	0	0	1	0	2	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0006	1041	3	0	0	3	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0007	1041	2	0	2	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0008	1041	2	0	0	2	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0009	1041	1	1	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0010	1015	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0012	1041	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0013	1041	1	1	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0014	1041	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0015	1041	1	0	0	1	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	c0016	1041	1	0	0	0	1	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7_chr9_33378191_33407568	1/1	c0001	1029	374	75	68	170	14	45	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0002	1029	20	19	1	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0003	1029	12	0	0	12	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0004	1029	12	0	3	7	1	1	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0005	1029	7	0	0	6	1	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0006	1029	4	0	0	4	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0007	1029	3	0	0	3	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0009	1029	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0010	1029	1	0	0	0	0	1	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0011	1029	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0012	1029	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	c0013	1029	1	0	0	0	0	1	copy fasta	AQP7	chr9	33378191	33407568
AQP8_chr16_25211947_25233932	1/1	c0001	786	222	50	41	94	8	27	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0002	786	166	27	29	89	4	17	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0003	786	7	5	2	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0004	786	6	6	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0005	786	6	0	4	0	1	1	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0006	786	3	3	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932