JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OBSCN_chr1_228203044_228383876	0/0	c0020	26778	3	0	3	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0021	26778	3	0	0	3	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0022	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0023	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0024	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0025	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0026	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0027	26778	2	1	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0028	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0029	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0030	26778	2	0	2	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0031	26778	2	0	2	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0032	26778	2	0	1	0	1	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0033	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0034	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0035	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0036	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0037	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0038	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0039	26778	2	0	0	0	1	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0040	26778	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0041	26778	2	0	0	0	0	2	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0042	26778	2	0	1	0	1	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0043	26778	2	0	1	0	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0044	26778	2	0	0	0	1	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0045	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0046	26778	2	0	0	2	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0047	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0048	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0049	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0050	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0051	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0052	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0053	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0054	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0055	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0056	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0057	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0058	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0059	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0060	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0061	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0062	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0063	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0064	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0065	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0066	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0067	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0068	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0069	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876