JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OCA2_chr15_27749875_28104315	0/0	c0006	2517	6	0	4	0	1	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0007	2517	6	2	0	0	0	4	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0008	2517	5	1	1	2	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0009	2517	4	2	2	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0010	2517	3	1	2	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0011	2517	2	1	0	0	1	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0012	2517	2	0	0	2	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0013	2517	2	0	0	2	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0014	2517	2	1	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0015	2517	2	0	0	0	0	2	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0016	2517	2	0	2	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0017	2517	2	2	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0018	2517	2	2	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0019	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0020	2517	1	0	0	1	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0021	2517	1	0	0	1	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0022	2517	1	0	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0023	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0024	2517	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0025	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0026	2517	1	0	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0027	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0028	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0029	2517	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0030	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0031	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0032	2517	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0033	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0034	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0035	2517	1	0	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0036	2517	1	0	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0037	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0038	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0039	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0040	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0041	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0042	2517	1	0	0	1	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0043	2517	1	0	0	1	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0044	2517	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0045	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0046	2517	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCEL1_chr19_17221226_17234219	1/0	c0001	795	161	27	32	63	8	30	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0002	795	133	20	24	79	5	5	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0003	795	107	31	20	45	2	9	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/1	c0004	795	18	7	4	0	2	4	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0005	795	5	0	0	5	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0006	795	4	2	0	2	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0007	795	4	4	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0008	795	2	2	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0009	795	2	0	0	2	0	0	copy fasta	OCEL1	chr19	17221226	17234219