JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OCEL1_chr19_17221226_17234219	0/0	c0010	795	2	2	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0011	795	1	1	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0012	795	1	1	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0013	795	1	1	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0014	795	1	0	0	1	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0015	795	1	0	0	1	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	c0016	795	1	0	0	0	1	0	copy fasta	OCEL1	chr19	17221226	17234219
OCIAD1_chr4_48826088_48866815	1/1	c0001	738	340	71	60	151	16	40	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	c0002	738	1	0	0	1	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	c0003	738	1	1	0	0	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD2_chr4_48880019_48911774	1/1	c0001	465	359	79	65	162	14	37	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	c0002	465	3	3	0	0	0	0	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	c0003	465	1	0	1	0	0	0	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	c0004	465	1	0	0	0	0	1	copy fasta	OCIAD2	chr4	48880019	48911774
OCLN_chr5_69487790_69563104	1/1	c0001	1569	275	68	60	114	3	28	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0002	1569	4	0	3	0	1	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0003	1569	3	3	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0004	1569	2	2	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0005	1569	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0006	1569	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0007	1569	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0008	1569	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0009	1569	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	c0010	1569	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCM2_chr7_97979687_97995196	1/1	c0001	330	445	98	75	208	18	44	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	c0002	330	2	1	0	1	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	c0003	330	1	0	1	0	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	c0004	330	1	0	0	1	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	c0005	330	1	1	0	0	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM_chr7_5875798_5891363	1/1	c0001	330	444	91	81	210	14	46	copy fasta	OCM	chr7	5875798	5891363
OCM_chr7_5875798_5891363	0/0	c0002	330	6	5	1	0	0	0	copy fasta	OCM	chr7	5875798	5891363
OCRL_chrX_129535259_129597556	1/1	c0001	2706	271	69	32	135	7	26	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	c0002	2706	2	2	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	c0003	2707	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	c0004	2706	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	c0005	2706	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	c0006	2706	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	c0007	2705	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCSTAMP_chr20_46535946_46555654	1/1	c0001	1701	330	42	60	179	9	38	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0002	1701	67	38	5	14	2	8	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0003	1701	8	0	0	8	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0004	1701	7	2	2	0	0	3	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0005	1701	5	5	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0006	1701	4	4	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0007	1701	3	0	2	0	1	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0008	1701	2	0	0	2	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0009	1701	2	0	0	2	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0010	1701	2	2	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0011	1701	2	2	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0012	1701	2	0	0	2	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654