JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OCSTAMP_chr20_46535946_46555654	0/0	c0013	1701	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0014	1701	1	1	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0015	1701	1	0	0	0	0	1	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0016	1701	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0017	1701	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0018	1701	1	1	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0019	1701	1	1	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	c0020	1701	1	0	1	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
ODAD1_chr19_48291462_48326971	1/0	c0001	2124	169	28	31	97	2	10	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/1	c0002	2124	73	13	10	31	4	14	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0003	2124	42	2	11	25	1	3	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0004	2124	28	9	8	0	4	7	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0005	2124	18	11	0	3	0	4	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0006	2124	7	7	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0007	2124	7	7	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0008	2124	6	1	5	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0009	2124	5	0	0	5	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0010	2124	5	4	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0011	2124	5	2	1	0	0	2	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0012	2124	4	0	3	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0013	2124	3	3	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0014	2124	2	0	2	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0015	2124	2	1	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0016	2124	2	0	2	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0017	2124	2	2	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0018	2124	2	2	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0019	2124	2	2	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0020	2124	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0021	2124	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0022	2124	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0023	2124	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0024	2124	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0025	2124	1	0	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0026	2124	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0027	2124	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0028	2124	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0029	2124	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0030	2124	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0031	2124	1	0	0	0	1	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0032	2124	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	c0033	2124	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD2_chr10_27807168_28004079	1/0	c0001	3135	95	24	22	36	6	6	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0002	3135	59	14	16	15	2	12	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0003	3135	36	3	4	24	2	3	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0004	3135	22	1	6	15	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0005	3135	12	0	2	7	2	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0006	3135	11	0	1	9	0	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0007	3135	9	4	3	1	0	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0008	3135	8	3	3	1	1	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0009	3135	7	3	2	0	1	1	copy fasta	ODAD2	chr10	27807168	28004079