JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ODAD2_chr10_27807168_28004079	0/0	c0010	3135	6	5	1	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0011	3135	3	2	1	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0012	3135	3	2	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0013	3135	3	3	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0014	3135	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0015	3135	2	0	2	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0016	3135	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0017	3135	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0018	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0019	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0020	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0021	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0022	3135	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0023	3135	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0024	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0025	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0026	3135	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0027	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0028	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0029	3135	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0030	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0031	3135	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0032	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/1	c0033	3135	1	0	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0034	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0035	3135	1	0	0	0	0	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0036	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0037	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0038	3135	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	c0039	3135	1	0	1	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD3_chr19_11415605_11440121	1/1	c0001	1788	375	81	69	173	15	35	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0002	1788	7	7	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0003	1788	3	0	1	0	2	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0004	1788	3	0	0	1	0	2	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0005	1788	2	0	1	0	0	1	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0006	1788	2	2	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0007	1788	2	0	1	0	1	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0008	1788	1	0	0	1	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0009	1788	1	1	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0010	1788	1	0	0	1	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	c0011	1788	1	1	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD4_chr17_41925617_41971503	1/1	c0001	2019	239	59	48	90	11	29	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0002	2019	71	17	12	29	3	10	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0003	2019	8	0	6	0	2	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0004	2019	6	0	2	4	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0005	2019	3	3	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0006	2016	3	0	3	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0007	2019	3	0	2	0	1	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0008	2019	2	2	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0009	2019	2	0	1	0	1	0	copy fasta	ODAD4	chr17	41925617	41971503