JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AQP8_chr16_25211947_25233932	0/0	c0007	786	2	2	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0008	786	1	1	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0009	786	1	1	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0010	786	1	0	1	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0011	786	1	0	1	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0012	786	1	0	0	0	0	1	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0013	786	1	1	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0014	786	1	0	0	0	1	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	c0015	786	1	0	0	1	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP9_chr15_58133381_58190911	0/1	c0001	888	347	64	71	155	16	40	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	1/0	c0002	888	58	24	4	25	2	2	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0003	888	5	0	0	5	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0004	888	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0005	888	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0006	888	1	0	0	0	0	1	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0007	888	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0008	888	1	0	1	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	c0009	888	1	0	0	0	0	1	copy fasta	AQP9	chr15	58133381	58190911
AQR_chr15_34846782_34974742	0/1	c0001	4458	240	45	37	128	6	23	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0002	4458	11	2	5	0	1	3	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0003	4458	8	7	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0004	4458	6	6	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0005	4458	5	5	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	1/0	c0006	4458	5	4	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0007	4458	5	0	0	4	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0008	4458	5	5	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0009	4458	4	4	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0010	4458	3	0	0	3	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0011	4458	3	3	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0012	4458	2	1	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0013	4458	2	2	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0014	4458	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0015	4458	1	0	0	0	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0016	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0017	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0018	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0019	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0020	4458	1	0	0	0	1	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0021	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0022	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0023	4458	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0024	4458	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0025	4458	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	c0026	4458	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
ARAF_chrX_47556205_47576908	1/1	c0001	1821	307	74	54	139	11	27	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0002	1821	3	0	0	2	0	1	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0003	1821	2	2	0	0	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0004	1822	1	0	0	0	0	1	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0005	1820	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0006	1822	1	0	0	0	0	1	copy fasta	ARAF	chrX	47556205	47576908