JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ODAD4_chr17_41925617_41971503	0/0	c0010	2019	1	1	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0011	2019	1	0	0	0	0	1	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	c0012	2019	1	0	0	1	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAM_chr4_70190725_70209576	1/0	c0001	840	321	81	59	141	7	32	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/1	c0002	840	104	14	6	72	2	9	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	c0003	840	16	0	6	0	3	7	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	c0004	840	2	2	0	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	c0005	840	1	0	1	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	c0006	840	1	0	0	1	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	c0007	840	1	1	0	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAPH_chr4_75551066_75569817	1/1	c0001	393	239	42	60	100	11	24	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0002	393	122	30	11	63	5	13	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0003	393	85	19	7	48	2	9	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0004	393	4	4	0	0	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0005	393	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0006	393	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0007	393	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	c0008	393	1	1	0	0	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODC1_chr2_10434968_10453327	1/1	c0001	1386	260	50	70	89	10	39	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0002	1386	146	26	8	104	2	6	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0003	1386	14	12	2	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0004	1386	10	9	1	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0005	1386	1	0	1	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0006	1386	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0007	1386	1	0	0	0	0	1	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0008	1386	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0011	1386	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	c0012	1386	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODF1_chr8_102546589_102566018	0/0	c0001	753	163	37	31	62	10	23	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/1	c0002	726	147	25	31	70	3	17	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	1/0	c0003	753	88	4	5	70	2	6	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0004	735	37	27	6	3	1	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0005	726	5	0	0	5	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0006	753	5	0	0	5	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0007	735	3	3	0	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0008	726	3	3	0	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0009	753	2	0	0	0	0	2	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0010	726	1	0	0	0	0	1	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0011	726	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0012	753	1	1	0	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0013	726	1	0	0	1	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0014	726	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0015	726	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	c0016	753	1	0	0	0	0	1	copy fasta	ODF1	chr8	102546589	102566018
ODF2L_chr1_86341837_86401323	0/0	c0001	1935	114	12	14	72	2	14	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/1	c0002	1935	97	32	13	44	2	5	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	1/0	c0003	1935	72	14	24	23	4	6	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0004	1935	40	0	1	36	0	3	copy fasta	ODF2L	chr1	86341837	86401323