JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ODF2L_chr1_86341837_86401323	0/0	c0005	1935	38	7	9	9	3	10	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0006	1935	15	8	7	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0007	1935	6	6	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0008	1935	6	0	0	6	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0009	1935	5	5	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0010	1935	3	0	0	3	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0011	1935	2	1	1	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0012	1935	2	2	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0013	1935	2	0	1	0	1	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0014	1935	1	0	1	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0015	1935	1	1	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0016	1935	1	0	1	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	c0017	1935	1	0	0	1	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2_chr9_128451006_128506292	0/1	c0001	2739	320	75	49	151	12	32	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	1/0	c0002	2739	4	3	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0003	2739	4	2	2	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0004	2739	3	0	0	3	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0005	2739	2	2	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0006	2739	2	0	0	0	0	2	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0007	2739	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0008	2739	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0009	2739	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0010	2739	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0011	2739	1	0	1	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0012	2739	1	0	0	1	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0013	2739	1	0	0	0	0	1	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0014	2739	1	0	0	1	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0015	2739	1	0	0	0	0	1	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0016	2739	1	0	0	1	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	c0017	2739	1	0	0	1	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF3B_chr22_50525426_50537498	1/0	c0001	762	389	91	74	166	15	42	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	c0002	762	7	1	0	2	1	3	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/1	c0003	762	5	3	0	0	0	1	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	c0004	762	2	2	0	0	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	c0005	762	1	1	0	0	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	c0006	762	1	0	0	1	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	c0007	762	1	0	0	1	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3L1_chr15_75719041_75732688	1/1	c0001	825	289	60	60	120	12	35	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0002	825	48	7	18	16	4	3	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0003	825	34	10	0	24	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0004	825	7	7	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0005	825	3	3	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0006	825	2	0	0	2	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0007	825	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0008	825	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	c0009	825	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L2_chr19_458361_479983	0/0	c0001	870	127	16	26	74	2	9	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	1/1	c0002	870	92	21	23	30	3	13	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0003	870	27	6	2	14	0	5	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0004	871	14	1	3	9	1	0	copy fasta	ODF3L2	chr19	458361	479983