JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ODF3L2_chr19_458361_479983	0/0	c0005	870	9	0	0	9	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0006	871	8	0	1	3	0	4	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0007	870	7	6	1	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0008	870	6	6	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0009	871	5	0	0	4	0	1	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0010	870	5	5	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0011	870	4	0	0	4	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0012	870	3	3	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0013	870	2	2	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0014	870	2	2	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0015	870	2	2	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0016	870	2	2	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0017	870	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0018	870	1	0	0	0	0	1	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0019	870	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0020	870	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0021	870	1	0	0	1	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0022	870	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0023	870	1	0	0	0	0	1	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0024	870	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	c0025	870	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3_chr11_191761_205258	1/1	c0001	765	189	68	41	53	10	15	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0002	765	173	18	22	103	3	27	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0003	765	11	0	7	3	1	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0004	765	3	0	1	2	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0005	765	3	0	3	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0006	765	2	0	0	0	2	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0007	765	2	2	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0008	765	1	0	0	1	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0009	765	1	0	0	0	0	1	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0010	765	1	0	0	0	0	1	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0011	765	1	1	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	c0012	765	1	1	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF4_chr17_8334840_8351046	0/0	c0001	774	136	44	13	65	6	8	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	1/1	c0002	774	119	9	19	58	6	25	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0003	774	90	20	10	58	1	1	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0004	774	53	3	23	17	2	8	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0005	774	26	17	5	2	1	1	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0006	774	2	0	0	2	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0007	774	1	1	0	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0008	774	1	1	0	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0009	774	1	0	0	0	0	1	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0010	774	1	0	0	1	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0011	774	1	0	0	1	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	c0012	774	1	1	0	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODR4_chr1_186370838_186426375	1/0	c0001	1365	309	68	38	165	9	28	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/1	c0002	1365	82	13	28	27	3	10	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	c0003	1365	4	0	0	4	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	c0004	1365	4	0	2	0	2	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	c0005	1365	4	0	0	4	0	0	copy fasta	ODR4	chr1	186370838	186426375