JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ODR4_chr1_186370838_186426375	0/0	c0006	1365	3	3	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	c0007	1365	2	2	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	c0008	1365	2	2	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
OFD1_chrX_13729748_13774357	1/1	c0001	3039	305	58	56	154	10	25	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0002	3039	6	4	2	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0003	3039	3	3	0	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0004	3039	2	2	0	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0005	3039	2	0	0	2	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0006	3039	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0007	3039	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0008	3043	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0009	3039	1	0	0	0	1	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0010	3039	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0011	3039	1	1	0	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0012	3045	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0013	3039	1	0	0	0	0	1	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	c0014	3039	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OGA_chr10_101779450_101823444	1/1	c0001	2751	316	79	61	137	13	24	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0002	2751	8	0	0	8	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0003	2751	8	0	0	0	0	8	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0004	2751	4	4	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0005	2751	3	1	2	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0006	2751	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0007	2751	1	0	0	0	1	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0008	2751	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0009	2751	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0010	2751	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0011	2751	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	c0012	2751	1	0	1	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGDHL_chr10_49729641_49767323	0/1	c0001	3033	133	16	31	70	6	9	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	1/0	c0002	3033	73	30	13	16	2	11	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0003	3033	58	16	22	11	1	8	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0004	3033	16	6	4	0	1	5	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0005	3033	6	6	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0006	3033	3	0	0	0	3	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0007	3033	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0008	3033	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0009	3033	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0010	3033	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0011	3033	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0012	3033	1	0	0	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0013	3003	1	0	1	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0014	3033	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0015	3033	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0016	3033	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0017	3033	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0018	3033	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0019	3033	1	0	0	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0020	3033	1	0	0	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0021	3033	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323