JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OGDHL_chr10_49729641_49767323	0/0	c0022	3033	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0023	3033	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0024	3033	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0025	3033	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0026	3033	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0027	3033	1	0	0	0	1	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	c0028	3033	1	0	1	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDH_chr7_44601627_44714066	1/0	c0001	3072	155	35	30	66	11	12	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0002	3072	97	42	5	45	0	5	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/1	c0003	3072	28	0	2	18	2	5	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0004	3072	8	5	1	0	2	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0005	3072	2	2	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0006	3072	2	2	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0007	3072	2	0	0	2	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0008	3072	2	0	0	2	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0009	3072	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0010	3072	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0011	3072	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0012	3072	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0013	3072	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0014	3072	1	0	1	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0015	3072	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0016	3072	1	1	0	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0017	3072	1	0	0	0	1	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	c0018	3072	1	0	1	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGFOD1_chr16_56446554_56484104	1/1	c0001	1629	341	76	56	164	11	32	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0002	1629	34	0	7	22	3	2	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0003	1629	24	1	2	15	0	6	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0004	1629	11	11	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0005	1629	6	0	0	4	0	2	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0006	1629	2	0	0	2	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0007	1629	1	0	1	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0008	1629	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0009	1629	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0010	1629	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0011	1629	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0012	1629	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0013	1629	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0014	1629	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0015	1629	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0016	1629	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0017	1629	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	c0018	1629	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD2_chr12_122970244_122985042	1/1	c0001	1053	327	58	65	154	10	38	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0002	1053	22	22	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0003	1053	5	1	1	0	0	3	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0004	1053	2	2	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0005	1053	1	0	1	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0007	1053	1	0	0	1	0	0	copy fasta	OGFOD2	chr12	122970244	122985042