JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OGFOD2_chr12_122970244_122985042	0/0	c0008	1027	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0009	1053	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0010	1053	1	0	0	1	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0011	1053	1	0	1	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0012	1053	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0013	1053	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	c0014	1053	1	0	0	0	0	1	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD3_chr17_82384210_82423586	1/1	c0001	960	120	45	27	18	10	18	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0002	960	90	12	13	60	1	4	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0003	960	58	5	14	32	1	6	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0004	960	35	10	3	15	1	6	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0005	960	8	3	2	2	0	1	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0006	960	7	7	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0007	960	7	0	3	0	1	3	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0008	960	5	0	5	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0009	960	4	2	2	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0010	960	2	2	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0011	960	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0012	960	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0013	960	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0014	960	1	0	0	0	0	1	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0015	960	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0016	960	1	0	0	0	0	1	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0017	960	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0018	960	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0019	960	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0020	960	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0021	960	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	c0022	960	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFRL1_chr6_71283811_71314059	1/1	c0001	1356	299	58	51	138	14	36	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0002	1356	105	31	20	44	2	8	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0003	1356	4	2	1	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0004	1356	3	1	1	1	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0005	1356	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0006	1356	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0007	1356	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0008	1356	1	0	1	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFR_chr20_62799835_62819000	1/0	c0001	2034	120	12	26	60	6	15	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0002	2034	55	0	10	37	1	7	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0003	2034	33	1	3	27	1	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0004	1914	27	1	5	12	2	7	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0005	1914	22	17	4	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/1	c0006	2034	16	1	9	5	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0007	2034	12	9	0	0	3	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0008	1974	12	2	3	1	3	3	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0009	2034	10	7	3	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0010	2034	10	0	0	9	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0011	2034	9	9	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0012	2034	6	6	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000