JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OGFR_chr20_62799835_62819000	0/0	c0013	1974	5	5	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0014	2034	5	0	0	5	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0015	2034	5	4	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0016	1914	5	0	3	0	0	2	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0017	2034	5	0	0	5	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0018	2034	4	4	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0019	2034	4	3	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0020	1974	4	0	0	3	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0021	2034	3	3	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0022	2094	3	0	0	3	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0023	2094	2	0	0	2	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0024	1974	2	0	1	0	1	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0025	1974	2	0	2	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0026	1914	2	1	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0027	2034	2	2	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0028	2034	2	2	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0029	2034	2	2	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0030	2034	2	0	0	1	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0031	1980	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0032	2034	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0033	1974	1	0	0	0	1	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0034	2034	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0035	2034	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0036	2034	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0037	2034	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0038	2034	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0039	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0040	1974	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0041	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0042	2034	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0043	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0044	2034	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0045	2034	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0046	2034	1	0	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0047	2154	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0048	1974	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0049	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0050	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0051	2034	1	0	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0052	1974	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0053	1854	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0054	1974	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0055	2154	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0056	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0057	1974	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0058	2034	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0059	2034	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0060	1914	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	c0061	1973	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGG1_chr3_9744952_9762407	1/0	c0001	1038	269	70	55	106	12	25	copy fasta	OGG1	chr3	9744952	9762407